| County | Site |
| Lawrence County | Buffalo River Floodplain |
| Shoal Creek Watershed |
| Chief Creek Watershed |
| South Fork Buffalo Watershed |
| Lewis County | Buffalo River Watershed |
| Marion County | Sequatchie River Floodplain |
| Town Creek Watershed |
| Marshall County | Duck River Floodplain |
| Maury County | Duck River Floodplain |
| Meigs County | Sewee Creek Floodplain |
| Monroe County | Little Tennessee River Floodplain |
| Citico Creek Watershed |
| Montgomery County | Red River Floodplain |
| Morgan County | Emory River Floodplain |
Clear Creek Floodplain |
| Perry County | Buffalo River Floodplain |
| Polk County | Conasauga River Floodplain |
| Rhea County | Whites Creek Watershed |
| Roane County | Whites Creek Watershed |
| Robertson County | Red River Floodplain |
| Scott County | Station Camp Creek Watershed |
| Lawson Branch Watershed |
| Gum Fork Watershed |
| Capuchin Creek Watershed |
| Cumberland River South Fork Watershed |
| Sevier County | French Broad River Floodplain |
| Sequatchie County | Sequatchie River Floodplain |
| Sullivan County | North Fork Holston River Floodplain |
| Union County | Clinch River Watershed |
| Van Buren County | Cane Creek Wateshed |
| Rocky River Watershed |
| Warren County | Hickory Creek Watershed (all of Hickory instead of just the West Fork) |
| Barren Fork River Watershed |
| Collins River Watershed |
| Rocky River Watershed |
| Washington County | Nolichucky River Floodplain |
| Lick Creek Watershed |
| Wayne County | Cypress Creek Watershed |
| Buffalo River Watershed |
| White County | Calfkiller River Watershed |
| Caney Fork River Watershed |
| Williamson County | Mill Creek Watershed |